ORIGINAL RESEARCH
Deciphering the Genetic Code of Wheat Genotypes:
A Regional Perspective in Pakistan
on Morpho-Agronomic Traits and Protein Profiling
More details
Hide details
1
Department of Genetics, University of Karachi 75270, Pakistan
2
School of Basic Medical Sciences, Shenzhen University Medical School, Shenzhen University,
Shenzhen, Guangdong, 518055, China
3
Department of Botany and Microbiology, College of Science, King Saud University,
P.O. 2455, Riyadh 11451, Saudi Arabia
4
Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory
of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences,
Shenzhen, Guangdong, 518020, China
Submission date: 2024-05-25
Final revision date: 2024-09-05
Acceptance date: 2025-02-16
Online publication date: 2025-04-22
Corresponding author
Nadia Khan
Department of Genetics, University of Karachi, 75270, Karachi, Pakistan
Abdul Waheed
Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory
of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences,
Shenzhen, Guangdong, 518020, China
KEYWORDS
TOPICS
ABSTRACT
Wheat is a staple diet due to its breadmaking quality, which is governed by seed storage proteins.
This research evaluated genetic variability in morphological attributes and profiled gluten proteins
in wheat genotypes. Sixty wheat varieties from Pakistan were assessed for agronomic traits, while
the diversity of endosperm storage proteins in sixty-six genotypes was evaluated using SDS-PAGE.
Moderate heritability for plant height (0.60) and flag leaf area (0.54) was noted in Khyber Pakhtunkhwa,
while Punjab showed moderate to high heritability for heading days (0.67), plant height (0.64), flag leaf
area (0.81), and flowering days (0.77). Sindh exhibited high heritability for spike length (0.88). A total of
61 alleles were found in 27 genotypes in Punjab, 49 in 15 genotypes in Sindh, and 48 in 24 genotypes
in KP. Cluster analysis revealed Bhittai as the most diverse genotype in Sindh, DN lines in KP,
and AS-02 in Punjab. These genotypes show significant diversity in gluten proteins, which
are crucial for grain quality traits. The study concludes that wheat genotypes have sufficient variation
in morpho-agronomic traits and protein profiling, which is useful for developing high-quality genotypes.
Future research should explore the genetic basis of gluten protein diversity and its relationship
with wheat quality traits using advanced genomic tools.
CONFLICT OF INTEREST
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
REFERENCES (52)
1.
AHMED M., QAMAR M., WAQAR S., NAEEM A., JAVAID R., TANVEER S., HUSSAIN I. Estimation of genetic components, heterosis and combining ability of elite Pakistani wheat varieties for yield attributing traits and stripe rust response. Vavilov Journal of Genetics and Breeding. 27 (6), 609, 2023.
https://doi.org/10.18699/VJGB-... PMid:37965373 PMCid:PMC10641056.
2.
BERES B.L., RAHMANI E., CLARKE J.M., GRASSINI P., POZNIAK C.J., GEDDES C.M., PORKER K.D., MAY W.E., RANSOM J.K. A systematic review of durum wheat: Enhancing production systems by exploring genotype, environment, and management (G×E×M) synergies. Frontiers in Plant Science. 11, 568657, 2020.
https://doi.org/10.3389/fpls.2... PMid:33193496 PMCid:PMC7658099.
3.
ISHAQUE W., SHELIA V., ANOTHAI J., ZAMAN M., HOOGENBOOM G. Determining optimum nitrogen management as a function of planting date for spring wheat (Triticum aestivum L.) under semi-arid conditions using a modeling approach. Journal of Arid Environments. 182, 104256, 2020.
https://doi.org/10.1016/j.jari....
4.
KATAMADZE A., VERGARA-DÍAZ O., UBEREGUI E., YOLDI-ACHALANDABASO A., ARAUS J.L., VICENTE R. Evolution of wheat architecture, physiology, and metabolism during domestication and further cultivation: Lessons for crop improvement. The Crop Journal. 11 (4), 1080, 2023.
https://doi.org/10.1016/j.cj.2....
5.
SLAFER G.A., GARCÍA G.A., SERRAGO R.A., MIRALLES D.J. Physiological drivers of responses of grains per m2 to environmental and genetic factors in wheat. Field Crops Research. 285, 108593, 2022.
https://doi.org/10.1016/j.fcr.....
6.
GAO F., MA D., YIN G., RASHEED A., DONG Y., XIAO Y., XIA X., WU X., HE Z. Genetic progress in grain yield and physiological traits in Chinese wheat cultivars of southern yellow and Huai Valley since 1950. Crop Science. 57 (2), 760, 2017.
https://doi.org/10.2135/cropsc....
7.
AMINIZADEH S., POURSEYEDI S., MOHAMMADI-NEJAD G., MOHAYEJI M., FARAHBAKHSH H., SALARPOUR M., ABDOLSHAHI R. Comprehensive morpho-physiological criteria for screening bread wheat (Triticum aestivum L.) genotypes under drought stress condition. Cereal Research Communications. 52 (1), 287, 2024.
https://doi.org/10.1007/s42976....
8.
KHAN H., KRISHNAPPA G., KUMAR S., MISHRA C.N., KRISHNA H., DEVATE N.B., RATHAN N.D., PARKASH O., YADAV S.S., SRIVASTAVA P. Genome-wide association study for grain yield and component traits in bread wheat (Triticum aestivum L.). Frontiers in Genetics. 13, 982589, 2022.
https://doi.org/10.3389/fgene.... PMid:36092913 PMCid:PMC9458894.
9.
XIAO J., LIU B., YAO Y., GUO Z., JIA H., KONG L., ZHANG A., MA W., NI Z., XU S. Wheat genomic study for genetic improvement of traits in China. Science China Life Sciences. 65 (9), 1718, 2022.
https://doi.org/10.1007/s11427... PMid:36018491.
10.
LANGRIDGE P., REYNOLDS M. Breeding for drought and heat tolerance in wheat. Theoretical and Applied Genetics. 134, 1753, 2021.
https://doi.org/10.1007/s00122... PMid:33715017 PMCid:PMC11811492.
11.
VAN FRANK G., RIVIÈRE P., PIN S., BALTASSAT R., BERTHELLOT J.-F., CAIZERGUES F., DALMASSO C., GASCUEL J.-S., HYACINTHE A., MERCIER F. Genetic diversity and stability of performance of wheat population varieties developed by participatory breeding. Sustainability. 12 (1), 384, 2020.
https://doi.org/10.3390/su1201....
12.
SABOURI H., ALEGH S.M., SAHRANAVARD N., SANCHOULI S. SSR linkage maps and identification of QTL controlling morpho-phenological traits in two Iranian wheat RIL populations. BioTech. 11 (3), 32, 2022.
https://doi.org/10.3390/biotec... PMid:35997340 PMCid:PMC9397039.
13.
GHAFFAR Y., ASHRAF W., AKHTAR N., ZESHAN M.A., GHANI M.U., FATIMA S., ANSARI M.J., ALFARRAJ S., MAQBOOL A. Estimation of statistical parameters in candidate wheat genotypes for yield-related traits. Journal of King Saud University-Science. 34 (8), 102364, 2022.
https://doi.org/10.1016/j.jksu....
14.
OUMATA S., MONNEVEUX P., ZAHARIEVA M., MEKLICHE-HANIFI L., DAVID J. Variation of morphological traits among wheat (Triticum aestivum L.) landraces from two regions of the Algerian Sahara. Potential interest for wheat breeding. Genetic Resources and Crop Evolution. 70 (1), 235, 2023.
https://doi.org/10.1007/s10722....
15.
THAPA R.S., SHARMA P.K., PRATAP D., SINGH T., KUMAR A. Assessment of genetic variability, heritability and genetic advance in wheat (Triticum aestivum L.) genotypes under normal and heat stress environment. Indian Journal of Agricultural Research. 53 (1), 51, 2019.
16.
BAYE A., BERIHUN B., BANTAYEHU M., DEREBE B. Genotypic and phenotypic correlation and path coefficient analysis for yield and yield-related traits in advanced bread wheat (Triticum aestivum L.) lines. Cogent Food & Agriculture. 6 (1), 1752603, 2020.
https://doi.org/10.1080/233119....
17.
EL-ESAWI M.A., ELASHTOKHY M.M., SHAMSELDIN S.A., EL-BALLAT E.M., ZAYED E.M., HEIKAL Y.M. Analysis of genetic diversity and phylogenetic relationships of wheat (Triticum aestivum L.) genotypes using phenological, molecular and DNA barcoding markers. Genes. 14 (1), 34, 2022.
https://doi.org/10.3390/genes1... PMid:36672774 PMCid:PMC9858705.
18.
MAHMOUD S.A., EL-SHARKAWY E.S., EMAM M. Breeding sesame for resistance to charcoal rot caused by Macrophomina phaseolina. SVU-International Journal of Agricultural Sciences. 6 (2), 18, 2024.
https://doi.org/10.21608/svuij....
19.
AHMED H.G.M.-D., FATIMA N., FAISAL A., ULLAH A., ALI M., AMEEN M., IRFAN M., IMRAN M. Characterization of Bread Wheat Genotypes Using Spike Related Traits for Sustainable Yield Potential. Journal of Applied Research in Plant Sciences. 4 (1), 469, 2023.
https://doi.org/10.38211/joarp....
20.
KHAN M.J., ALI M.F., SHAHWANI S.A., WAHEED A., AZIZ I. Exploring the Role of Foliar Application of Aspirin on Growth and Productivity of Wheat under Control and Rainfed Conditions. Journal of Plant and Environment. 3 (1), 01, 2021.
https://doi.org/10.33687/jpe.0....
21.
BUKHARI M.A., SHAH A.N., FAHAD S., IQBAL J., NAWAZ F., MANAN A., BALOCH M.S. Screening of wheat (Triticum aestivum L.) genotypes for drought tolerance using polyethylene glycol. Arabian Journal of Geosciences. 14 (24), 2808, 2021.
https://doi.org/10.1007/s12517....
22.
ANWAR T., MUNWWAR F., QURESHI H., SIDDIQI E.H., HANIF A., ANWAAR S., GUL S., WAHEED A., ALWAHIBI M.S., KAMAL A. Synergistic effect of biochar-based compounds from vegetable wastes and gibberellic acid on wheat growth under salinity stress. Scientific Reports. 13 (1), 19024, 2023.
https://doi.org/10.1038/s41598... PMid:37923861 PMCid:PMC10624671.
23.
ANWAR T., SHEHZADI A., QURESHI H., SHAH M.N., DANISH S., SALMEN S.H., ANSARI M.J. Alleviation of cadmium and drought stress in wheat by improving growth and chlorophyll contents amended with GA3 enriched deashed biochar. Scientific Reports. 13 (1), 18503, 2023.
https://doi.org/10.1038/s41598... PMid:37898671 PMCid:PMC10613229.
24.
TCHERKEZ G., BEN MARIEM S., LARRAYA L., GARCÍA-MINA J.M., ZAMARREÑO A.M., PARADELA A., CUI J., BADECK F.-W., MEZA D., RIZZA F. Elevated CO2 has concurrent effects on leaf and grain metabolism but minimal effects on yield in wheat. Journal of Experimental Botany. 71 (19), 5990, 2020.
https://doi.org/10.1093/jxb/er... PMid:32687190 PMCid:PMC7751139.
25.
DE SOUSA T., RIBEIRO M., SABENÇA C., IGREJAS G. The 10,000-year success story of wheat! Foods. 10 (9), 2124, 2021.
https://doi.org/10.3390/foods1... PMid:34574233 PMCid:PMC8467621.
26.
XUE C., MATROS A., MOCK H.-P., MÜHLING K.-H. Protein composition and baking quality of wheat flour as affected by split nitrogen application. Frontiers in Plant Science. 10, 452714, 2019.
https://doi.org/10.3389/fpls.2... PMid:31156690 PMCid:PMC6530357.
27.
SIDDIQI R.A., SINGH T.P., RANI M., SOGI D.S., BHAT M.A. Diversity in grain, flour, amino acid composition, protein profiling, and proportion of total flour proteins of different wheat cultivars of North India. Frontiers in Nutrition. 7, 141, 2020.
https://doi.org/10.3389/fnut.2... PMid:33015119 PMCid:PMC7506077.
28.
ZHANG H., TANG S., WANG H., WANG Y., ZHI H., LIU B., ZHANG R., MA Q., JIA G., FENG B. Genetic diversity of grain yield traits and identification of a grain weight gene SiTGW6 in foxtail millet. Theoretical and Applied Genetics. 137 (4), 84, 2024.
https://doi.org/10.1007/s00122... PMid:38493242.
29.
WIESER H., KOEHLER P., SCHERF K.A. Chemistry of wheat gluten proteins: Qualitative composition. Cereal Chemistry. 100 (1), 23, 2023.
https://doi.org/10.1002/cche.1....
30.
NAGY A.E.-F., ABD-ELSAYED S., MAHGOUB E., KOMBER R. Genetical studies on wheat drought tolerance using molecular and biochemical markers. Zagazig Journal of Agricultural Research. 43 (6), 2411, 2016.
https://doi.org/10.21608/zjar.....
31.
WIESER H., KOEHLER P., SCHERF K.A. Chemistry of wheat gluten proteins: Quantitative composition. Cereal Chemistry. 100 (1), 36, 2023.
https://doi.org/10.1002/cche.1....
32.
GEISSLITZ S., PRONIN D., NEERUKONDA M., CURELLA V., NEUFANG S., KOCH S., WEICHERT H., WEBER H., BÖRNER A., SCHUPPAN D. Breeding from 1891 to 2010 did not increase the content of amylase/trypsin-inhibitors in wheat (Triticum aestivum). npj Science of Food. 7 (1), 43, 2023.
https://doi.org/10.1038/s41538... PMid:37612428 PMCid:PMC10447418.
33.
PRONIN D., GEISSLITZ S., BÖRNER A., SCHERF K.A. Fingerprinting of wheat protein profiles for improved distinction between wheat cultivars and species. Cereal Chemistry. 97 (5), 999, 2020.
https://doi.org/10.1002/cche.1....
34.
WANG Q., SUN G., REN X., DU B., CHENG Y., WANG Y., LI C., SUN D. Dissecting the genetic basis of grain size and weight in barley (Hordeum vulgare L.) by QTL and comparative genetic analyses. Frontiers in Plant Science. 10, 469, 2019.
https://doi.org/10.3389/fpls.2... PMid:31105718 PMCid:PMC6491919.
35.
SINGH S.P., CHAND P., SINGH V., SINGH A., TIWARI A., SINGH A., KUMAR M. Morphological Characterization and Assessment of Genetic Variability, Heritability and Genetic Advance in Bread Wheat (Triticum aestivum L.). Plant Cell Biotechnology and Molecular Biology. 25 (1-2), 120, 2024.
https://doi.org/10.56557/pcbmb....
36.
GORDEEVA E., SHAMANIN V., SHOEVA O., KUKOEVA T., MORGOUNOV A., KHLESTKINA E. The strategy for marker-assisted breeding of anthocyanin-rich spring bread wheat (Triticum aestivum L.) cultivars in Western Siberia. Agronomy. 10 (10), 1603, 2020.
https://doi.org/10.3390/agrono... PMCid:PMC12187999.
37.
MAHARAJAN T., ROCH G.V., CEASAR S.A. Recent advancements of molecular breeding and functional genomics for improving nitrogen-phosphorus-and potassium-use efficiencies in wheat. In: Molecular breeding in wheat, maize and sorghum: Strategies for improving abiotic stress tolerance and yield, CABI Digital Library, p.170, 2021.
https://doi.org/10.1079/978178....
38.
JONES B.H., BLAKE N.K., HEO H.-Y., MARTIN J.M., TORRION J.A., TALBERT L.E. Allelic response of yield component traits to resource availability in spring wheat. Theoretical and Applied Genetics. 134, 603, 2021.
https://doi.org/10.1007/s00122... PMid:33146737.
39.
KUMAR A., MANTOVANI E.E., SIMSEK S., JAIN S., ELIAS E.M., MERGOUM M. Genome wide genetic dissection of wheat quality and yield related traits and their relationship with grain shape and size traits in an elite×non-adapted bread wheat cross. PLOS One. 14 (9), e0221826, 2019.
https://doi.org/10.1371/journa... PMid:31532783 PMCid:PMC6750600.
40.
KUMAR D., KUMAR A., CHHOKAR V., GANGWAR O.P., BHARDWAJ S.C., SIVASAMY M., PRASAD S.S., PRAKASHA T., KHAN H., SINGH R. Genome-wide association studies in diverse spring wheat panel for stripe, stem, and leaf rust resistance. Frontiers in Plant Science. 11, 748, 2020.
https://doi.org/10.3389/fpls.2... PMid:32582265 PMCid:PMC7286347.
41.
CHAUDHARY S., DEVI P., BHARDWAJ A., JHA U.C., SHARMA K.D., PRASAD P.V., SIDDIQUE K.H., BINDUMADHAVA H., KUMAR S., NAYYAR H. Identification and characterization of contrasting genotypes/cultivars for developing heat tolerance in agricultural crops: Current status and prospects. Frontiers in Plant Science. 11, 587264, 2020.
https://doi.org/10.3389/fpls.2... PMid:33193540 PMCid:PMC7642017.
42.
FISCHER R., REBETZKE G. Indirect selection for potential yield in early-generation, spaced plantings of wheat and other small-grain cereals: a review. Crop and Pasture Science. 69 (5), 439, 2018.
https://doi.org/10.1071/CP1740....
43.
AMIRI R., SASANI S., JALALI-HONARMAND S., RASAEI A., SEIFOLAHPOUR B., BAHRAMINEJAD S. Genetic diversity of bread wheat genotypes in Iran for some nutritional value and baking quality traits. Physiology and Molecular Biology of Plants. 24, 147, 2018.
https://doi.org/10.1007/s12298... PMid:29398846 PMCid:PMC5787113.
44.
WANG X., SONG R., AN Y., PEI H., GAO S., SUN D., REN X. Allelic variation and genetic diversity of HMW glutenin subunits in Chinese wheat (Triticum aestivum L.) landraces and commercial cultivars. Breeding Science. 72 (2), 169, 2022.
https://doi.org/10.1270/jsbbs.... PMid:36275938 PMCid:PMC9522535.
45.
GIANCASPRO A., GIOVE S.L., ZACHEO S.A., BLANCO A., GADALETA A. Genetic variation for protein content and yield-related traits in a durum population derived from an inter-specific cross between hexaploid and tetraploid wheat cultivars. Frontiers in Plant Science. 10, 1509, 2019.
https://doi.org/10.3389/fpls.2... PMid:31824537 PMCid:PMC6883369.
46.
LI W., WAN Y., LIU Z., LIU K., LIU X., LI B., LI Z., ZHANG X., DONG Y., WANG D. Molecular characterization of HMW glutenin subunit allele 1Bx14: further insights into the evolution of Glu-B1-1 alleles in wheat and related species. Theoretical and Applied Genetics. 109, 1093, 2004.
https://doi.org/10.1007/s00122... PMid:15290043.
47.
DAI Y., LI J., SHI J., GAO Y., MA H., WANG Y., MA H. Molecular Characterization and Marker Development of the HMW-GS Gene from Thinopyrum elongatum for Improving Wheat Quality. International Journal of Molecular Sciences. 24 (13), 11072, 2023.
https://doi.org/10.3390/ijms24... PMid:37446250 PMCid:PMC10341674.
48.
ZHAO L., LI L., SONG L., LIU Z., LI X., LI X. HMW-GS at Glu-B1 locus affects gluten quality possibly regulated by the expression of nitrogen metabolism enzymes and glutenin-related genes in wheat. Journal of Agricultural and Food Chemistry. 68 (19), 5426, 2020.
https://doi.org/10.1021/acs.ja... PMid:32314918.
49.
YANG T., WANG P., WANG F., ZHOU Q., WANG X., CAI J., HUANG M., JIANG D. Influence of starch physicochemical properties on biscuit-making quality of wheat lines with high-molecular-weight glutenin subunit (HMW-GS) absence. LWT- Food Science and Technology. 158, 113166, 2022.
https://doi.org/10.1016/j.lwt.....
50.
CHEN X., YIN G., BÖRNER A., XIN X., HE J., NAGEL M., LIU X., LU X. Comparative physiology and proteomics of two wheat genotypes differing in seed storage tolerance. Plant Physiology and Biochemistry. 130, 455, 2018.
https://doi.org/10.1016/j.plap... PMid:30077921 PMCid:PMC11393652.
51.
MICHEL S., LÖSCHENBERGER F., AMETZ C., PACHLER B., SPARRY E., BÜRSTMAYR H. Combining grain yield, protein content and protein quality by multi-trait genomic selection in bread wheat. Theoretical and Applied Genetics. 132, 2767, 2019.
https://doi.org/10.1007/s00122... PMid:31263910 PMCid:PMC6763414.
52.
PARENTI O., GUERRINI L., CANUTI V., ANGELONI G., MASELLA P., ZANONI B. The effect of the addition of gelatinized flour on dough rheology and quality of bread made from brown wheat flour. LWT- Food Science and Technology. 106, 240, 2019.
https://doi.org/10.1016/j.lwt.....