ORIGINAL RESEARCH
Characteristics of Bacterial Communities in Rhizosphere and Non-Rhizosphere Soil of the Relict Plant Diplandrorchis sinica S. C. Chen
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Bo Qu 6
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1
College of Forestry, Shenyang Agricultural University, Shenyang 110866, Liaoning, China
 
2
Key Laboratory of Forest Tree Genetics, Breeding and Cultivation of Liaoning Province, Shenyang 110866, Liaoning, China
 
3
Liaoning Laotudingzi national nature reserve fushun administration, Xinbin 113208, Liaoning, China
 
4
College of Life Science and Bioengineering, Shenyang Institute of Technology, Shenyang 113122, Liaoning, China
 
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Liaoning Provincial Forestry and Grassland Bureau, Shenyang 110001, Liaoning, China
 
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College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, Liaoning, China
 
 
Submission date: 2023-08-24
 
 
Final revision date: 2024-02-28
 
 
Acceptance date: 2024-06-30
 
 
Online publication date: 2024-11-18
 
 
Publication date: 2025-07-05
 
 
Corresponding author
Xuhui Chen   

College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, Liaoning, China, China
 
 
Pol. J. Environ. Stud. 2025;34(5):5443-5454
 
KEYWORDS
TOPICS
ABSTRACT
Diplandrorchis sinica is a monotypic orchid relict plant. Soil habitat and soil microorganisms are the main factors for the growth and development of orchid species. In order to find out the soil physical and chemical properties and soil microbial community characteristics in the growing area of D. sinica and expand the population of D. sinica, the rhizosphere and non-rhizosphere soils in the Rare and Endangered Species Reserve of Fushun, Laotudingzi Nature Reserve, Liaoning Province, were collected for Illumina Miseq high-flux sequencing. The Alpha and Beta diversity and LEfSe of the sequencing data were analyzed, combined with the physical and chemical properties of the soil in the growth area of D. sinica to study the changes of soil physical and chemical properties, soil bacterial composition and diversity in the growing area of D. sinica. The results showed that a total of 26,690 valid bacterial sequences were obtained by sequencing. After cluster analysis, 9,556 OTUs were classified into 34 phyla, 108 classes, 316 families, and 472 genera. Soil bacterial diversity is rich in D. sinica, and the main dominant bacteria in rhizosphere and non-rhizosphere soil were Proteobacteria, Bacteroidetes, Acidobacteria and Verrucomicrobia; at the level of order classification, Rhizobiales and Gaiellales were mainly rhizobiales; at genus classification level, Hyphomicrobium and Rhizobium were the main genera. The values of total nitrogen (STN), available phosphorus (AP), hydrolyzed nitrogen (HN), total phosphorus (TP), total potassium (TK), and pH in rhizosphere soil of D. sinica were significantly different from those in non-rhizosphere soil. Moreover, it was significantly correlated with Proteobacteria, Actinobacteria, and Verrucomicrobia in soil microorganisms. The soil physical and chemical properties affected the microbial and bacterial richness in rhizosphere soil of Diactylodes. LEfSE analysis showed that 13 indicator species were selected when the alpha level was LDA > 2 and p < 0.05. The indicator species of Rhizo were Yersinia, Thermogemmatisporaceae, Thermogemmatisporales, Spirosoma, etc. Bulk is mainly Merhylophilaceae, Methylophilales, Chromatiales, etc. This study revealed for the first time the diversity of rhizosphere and non-rhizosphere soil bacterial communities of the endangered species D. sinica, laying a foundation for the research on the mechanism of the endangered species.
CONFLICT OF INTEREST
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
REFERENCES (41)
1.
CAO W., WU Y.Y., LI Y., CONG X.X. Priority conservation areas for threatened plants in Northeast China. Journal of Applied Ecology, 24 (2), 326, 2013.
 
2.
CHEN X.Q. Dichondra, a new genus of Orchidaceae that is very primitive and important in phylogeny. Journal of Plant Taxonomy, 17 (1), 1, 1979.
 
3.
Flora of China Editorial Committee. Flora of China, Orchidaceae. Beijing: Science Press, China, 25, pp. 183, 2009.
 
4.
ZHU Y.P., LI S.Q., LIU Y.Q., JU W.P., SHI B.L., TIAN H.S. A preliminary report on the regional survey of the distribution of the population of Spodoptera sinensis. Liaoning Forestry Science and Technology, 1, 23, 2004.
 
5.
ZHANG L.J., SHEN H.L., CUI J.G., ZHOU Q., JU W.P., LI H.Y. Rare and Endangered Plant-Dichondra. Liaoning Forestry Science and Technology, 6, 50, 2008.
 
6.
YANG Q.Y. Study on Diversity of Orchidaceae Mycorrhizal Fungi and Its Influence on Orchid [D]. Dissertation for the Degree, Chinese Academy of Forestry, 6, 1, 2018.
 
7.
ZHENG X.J., YE J., CUAN C.D., MA H.Y. Review on Recent Progress of Orchid Seeds Germination. Northern Horticulture, (19), 206, 2010.
 
8.
FU Y.J., ZHANG J.L., HOU X.Q. Comparative Analysis of Fungi Diversity in Rizospheric and Non-rhizospheric Soil from Cypripedium macranthum Estimated via High-throughput Sequencing. Acta Agriculturae Borealioccidentalis Sinica, 28 (02), 253, 2019.
 
9.
HUANG M., JIANG B., GAO D.Z., XIE B., WEI S.Y. Community characteristics of endophytic fungi and soil fungi in the Calanthe sieboldii. Ecological Science, 41 (4), 112, 2022.
 
10.
ZHANG J., HOU X.Q., FU Y.J. Rhizospheric Bacteria Diversity of Cypripedium macranthum Estimated via High Throughput Sequencing. Southwest China Journal of Agricultural Sciences, 30 (4), 811, 2017.
 
11.
JIANG Y.L., CHEN X.H., MIAO Q., QU B. Difference in fungal communities between in roots and in root-associated soil of nine orchids in Liaoning, China. Chinese Journal of Plant Ecology, 43, 1079, 2019. https://doi.org/10.17521/cjpe.....
 
12.
HUANG M., JIANG B., GAO D.Z. Community characteristics of endophytic fungi and soil fungi in the Calanthe sieboldii. Ecological Science, 41 (4), 112, 2022.
 
13.
PRASHAR P., KAPOOR N., SACHDEVA S. Rhizosphere: its structure, bacterial diversity and significance. Reviews in Environmental Science and Bio/Technology, 13, 63, 2014. https://doi.org/10.1007/s11157....
 
14.
LU Y., ROSENCRANTZ D., LIESACK W. Structure and activity of bacterial community inhabiting rice roots and the rhizosphere. Environmental Microbiology, 8 (8), 1351, 2006. https://doi.org/10.1111/j.1462... PMid:16872399.
 
15.
LV R. The Distribution of Diplandrorchis sinica S.C.Chen and the New Discovery of Phenological Observation. Journal of Heilongjiang Vocational Institute of Ecological Engineering, 30 (1), 16, 2017.
 
16.
ZHANG H., ZHANG H.S., FU J., HE H. Habitat characteristics of endangered plant Diplandrorchis sinica population in Mt. Laotudingzi of eastern Liaoning province. Journal of Liaoning Normal University (Natural Science Edition), 37 (3), 389, 2014.
 
17.
ZHANG L.J., ZHOU Q., JU W.P., LI H.Y., WANG Y.J., ZHOU Y.B. Investigation on habitat of rare and endangered plants of Diplandrorchis. Northern Horticulture, (16), 111, 2010.
 
18.
QU B., JIANG Y.L., ZHANG Y.Z.H., ZHANG L.J. Diplandrorchis Sinica Mycorrhizal Fungi Optimization of Culture Conditions. Hubei Agricultural Sciences, 55 (22), 5798, 2016.
 
19.
CAPORASO J.G., LAUBER C.L., WALTERS W.A., BERG-LYONS D., LOZUPONE C.A., TURNBAUGH P.J., FIERER N., KNIGHT R. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. PNAS, 108 (Suppl 1), 4516, 2011. https://doi.org/10.1073/pnas.1... PMid:20534432 PMCid:PMC3063599.
 
20.
CAPORASO J.G., LAUBER C.L., WALTERS W.A., BERG-LYONS D., HUNTLEY J., FIERER N., OWENS S.M., BETLEY J., FRASER L., BAUER M. Ultrahigh-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME Journal, 6 (8), 1621, 2012. https://doi.org/10.1038/ismej.... PMid:22402401 PMCid:PMC3400413.
 
21.
EDGAR R.C., HAAS B.J., CLEMENTE J.C., QUINCE C., KNIGHT R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, 27 (16), 2194, 2011. https://doi.org/10.1093/bioinf... PMid:21700674 PMCid:PMC3150044.
 
22.
WANG Q., GARRITY G.M., TIEDJE J.M., COLE J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73 (16), 5261, 2007. https://doi.org/10.1128/AEM.00... PMid:17586664 PMCid:PMC1950982.
 
23.
YANG H.J., WANG Q., WAN Z.X., ZHANG Z.Y., CHEN D.D., TAN J. Structure and diversity of microbial communities in the rhizosphere and non-rhizosphere soil in areas with invasive Solidago canadensis L. Journal of Biosafety, 30 (4), 235, 2021.
 
24.
GUO H., TANG W.P. Enzyme activity and microbial community diversity in rhizosphere and non-rhizosphere of Larix principis-rupprechtii. Ecology and Environmental Sciences, 29 (11), 2163, 2020.
 
25.
ZHENG M.X., CHEN H., ZHU Y.J., SU H.L. Microbial diversity in rhizosphere and non-rhizosphere soils of Paris polyphylla var. chinensis plants. Fujian Journal of Agricultural Sciences, 35 (12), 1357, 2020.
 
26.
TONG Q., CHEN M.T., LONG J.Q., TONG F.P., LI G., LIU Z.H., CHEN R., WU M. Research on soil nutrient characteristics at rhizosphere and non-rhizosphere for different age groups of Choerospondias axillaris. Journal of Central South University of Forestry and Technology, 39 (12), 108, 2019.
 
27.
ZHANG J., HOU X.Q., FU Y.J. Analysis of bacterial diversity in rhizosphere soil of Cypripedium grandiflorum based on high-throughput sequencing. Journal of Southwest Agriculture, 30 (4), 811, 2017.
 
28.
WANG X.W., HONG Z.H., LIU A.R., LUO L.X. Diversity analysis of soil bacterial community structure in vineyards based on fluorescence quantitative PCR and high-throughput sequencing technology. Wine Technology, 269 (11), 28, 2016.
 
29.
CHEN Y.X., DENG J.J., ZHOU Y.B., YIN Y., WEI Y.W., BAI X.J., ZHU W.X. Characteristics of soil microbial community in natural secondary forest of Quercus mongolica and its relationship with soil physical and chemical properties. Journal of Shenyang Agricultural University, 49 (4), 409, 2018.
 
30.
LIU L., SUN L., ZHANG R.Y., YAO N., LI L.B. Diversity of Indoleacetic Acid producing Endophytic Bacteria from the Roots of Cymbidium album. Biodiversity Science, 18 (2), 182, 2010. https://doi.org/10.3724/SP.J.1....
 
31.
HOU T. Diversity of mycorrhizal fungi in dominant orchids in Huanglong Valley [D]. Beijing Forestry University, 67, 2010.
 
32.
CHU X.L., YANG B., GAO L., LI H.L., HU L., YANG N. Species diversity of culturable bacteria isolated from the roots of Cymbidium hybridum. Plant Science Journal, 28 (2), 199, 2010. https://doi.org/10.3724/SP.J.1....
 
33.
BHATTACHARJEE A., DUBEY S., SHARMA S. Storage of soil microbiome for application in sustainable agriculture: prospects and challenges. Environmental Science and Pollution Research, 29 (3), 3171, 2022. https://doi.org/10.1007/s11356... PMid:34718953.
 
34.
AHKAMI A.H., WHITE R.A., HANDAKUMBURA P.P. Enhancing sustainable plant ecosystem productivity. Rhizosphere Engineering, (3), 233, 2017. https://doi.org/10.1016/j.rhis....
 
35.
PENG J.G., GONG J.Y., FAN Y.H., ZHANG Y.F., BAI Q.Y., WANG Y.M., XIE L.J. Diversity of soil microbial communities in the inter-root and non-inter-root areas of Rhododendron brevicornis. Forestry Science, 58 (2), 89, 2022.
 
36.
JING H. Mechanisms of nitrogen addition affecting greenhouse gas release from inter-root and non-inter-root soils of Pinus sylvestris [D]. Doctoral Dissertation, Northwest Agriculture and Forestry University, 2021.
 
37.
GAN D., FENG J., HAN M., ZENG H., ZHU B. Rhizosphere effects of woody plants on soil biogeochemical processes: A meta-analysis. Soil Biology and Biochemistry, 160, 108310, 2021. https://doi.org/10.1016/j.soil....
 
38.
WU A.L., JIAO X.Y., WANG J.S., DONG E.W., GUO J., WANG L.G., SUN A.Q., HU H.W. Sorghum rhizosphere effects reduced soil bacterial diversity by recruiting specific bacterial species under low nitrogen stress. Science of the Total Environment, 770, 144742, 2021. https://doi.org/10.1016/j.scit... PMid:33736399.
 
39.
XIE F.C., ZHANG G.Y., ZHENG Q.J., LIU K.M., YIN X.J., SUN X.Y., SAUD S., SHI Z.J., YUAN R.L., DENG W.J., ZHANG L., CUI G., CHEN Y.J. Beneficial effects of mixing Kentucky bluegrass with red fescue via plant-soil interactions in black soil of Northeast China. Frontiers in Microbiology, 11, 556118, 2020. https://doi.org/10.3389/fmicb.... PMid:33193137 PMCid:PMC7656059.
 
40.
HU H.Y., LI H., HAO M.M., REN Y.N., ZHANG M.K., LIU R.Y., ZHANG Y., LI G., CHEN J.S., NING T.Y., KUZYAKOV Y. Nitrogen fixation and crop productivity enhancements codriven by intercrop root exudates and key rhizosphere bacteria. Journal of Applied Ecology, 58 (10), 2243, 2021. https://doi.org/10.1111/1365-2....
 
41.
YIN C.T., VARGAS J.M.C., SCHLATTER D.C., HAGERTY C.H., HULBERT S.H., PAULITZ T.C. Rhizosphere community selection reveals bacteria associated with reduced root disease. Microbiome, 9 (1), 86, 2021. https://doi.org/10.1186/s40168... PMid:33836842 PMCid:PMC8035742.
 
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